I love how websites like Coursera pioneered the abundance of free MOOCs by many awesome institutions and professors.
I have not taken many MOOCs so far but one I did take and quite liked was Learning How to Learn. Although I liked Mind for Numbers book more. The course is also based on the book.
I keep a Trello board of courses I am taking and plan to take.
Has some great courses
hn.academy - Collects, ranks, and showcases the online courses recommended by Hacker News users.
Class Central - Search online courses.