Rosalind - Platform for learning bioinformatics and programming through problem solving.
Kindred - Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
fastq-rs - Can process fastq files at about the speed of the coreutils.
nglview - Jupyter widget to interactively view molecular structures and trajectories.
ngl - WebGL protein viewer.
Seq - High-performance, Pythonic language for bioinformatics.
The Biostar Handbook - Introduces readers to bioinformatics, the scientific discipline at the intersection of biology, computer science, and statistical data analytics dedicated to the digital processing of genomic information.
Lattice - Creates design-automation workflows that fundamentally change engineering biology.
GuacaMol - Benchmarks for generative chemistry.
Computer-Designed Organisms - Scalable pipeline for creating functional novel lifeforms.
Rust-Bio - Provides implementations of many algorithms and data structures that are useful for bioinformatics.
Machine Boss - Bioinformatics Open Source Sequence machine.
atomium - Python molecular modeller (with .pdb/.cif/.mmtf parsing and production).
PoincareMaps - Poincare maps recover continuous hierarchies in single-cell data.
OpenMM - Toolkit for molecular simulation using high performance GPU code.
Scanpy - Single-Cell Analysis in Python.
elPrep - High-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines.
CReM - Open-source Python framework to generate chemical structures using a fragment-based approach.