Biology

Notes
The body is always trying to maintain homeostasis by either allowing or removing certain particles/molecules/chemicals/compounds/..
Links
​The Secret Life of Plankton​
​What Bodies Think About: Bioelectric Computation Outside the Nervous System - NeurIPS 2018 - Incredible research. (HN)
​Ask HN: Can we write a programming language for biology? (2019)​
​Awesome Bio Datasets​
​Kappa - Rule-based language for modeling systems of interacting agents. While its current development is primarily motivated by molecular systems biology, its range of applications is quite broad.
​KaSim - Stochastic simulator for rule-based models written in Kappa. KaSa is a static analyser for Kappa models.
​BioJulia - Julialang community for biologists and bioinformaticians, working to create great modern software packages for computing with biological data.
​Rob Reid - the dark side of gene editing and synthetic biology (2019)​
​New universe of miniproteins is upending cell biology and genetics (2019) (HN)
​Biology is Eating the World: A Manifesto (2019) (HN)
​Ask HN: Getting started in biology with a software background (2019)​
​A natural biomolecule has been measured acting like a quantum wave for the first time (2019) (Paper)
​KEGG PATHWAY - Collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.
​Hand drawn chart of all the metabolic pathways in the body​
​2019 - The Year in Biology​
​Synthetic Biology One course​
​Accelerating Photosynthesis (HN)
​Algorithmic Botany (HN)
​The Algorithmic Beauty of Plants (1990) (PDF) (HN) (Code)
​the Node - Community site for and by developmental biologists.
​Quantum Biology - How Plants Use Quantum Mechanics (2020)​
​HN: If the heart is a muscle, why doesn't it ever get tired?​
​Zhang Lab - Studies biological diversity to discover systems and processes that may be harnessed for the improvement of human health.
​Entropy and life (HN)
​The Secret Lives of Fungi (2020) (HN)
​What happens in our brain when we feel an emotion (especially fear, anxiety)​
​Formal Systems in Biology - Collection of resources that apply formal systems to model biological processes.
​MBARI's Bioinspiration Lab​
​bioRxiv.org - Preprint server for Biology.
​Modeling Life - The Mathematics of Biological Systems.
​Why Are Plants Green? To Reduce the Noise in Photosynthesis (2020) (HN)
​Cell Biology by the Numbers​
​Haseloff Lab - Synthetic Biology for engineering plant growth.
​When Two Bacteria Become One (2020) (HN)
​Trefle Botanical API (HN) (Web)
​When Plants Go to War (HN)
​Adaptive optics/lattice light-sheet microscope (2018)​
​Drosophila Cell Division on Lattice Light Sheet Microscope​
​Mushroom spores spreading in the wind​
​Cell Press - Publisher of biomedical journals.
​Cell Signaling Technologies – Most detailed 3D model of human cells (2020) (HN)
​Building a chemical blueprint for human blood (2020)​
​I should have loved biology (HN)
​Biochemical Pathways - Provide an overview of the chemical reactions of cells in various species and organs.
​Dr. Najeeb Medical Lectures​
​Fungi’s Lessons for Adapting to Life on a Damaged Planet (2020)​
​Handbook of Biological Statistics​
​American Society for Microbiology​
​Mushrooms, Russia and History Book (1957)​
​A single cell slime mold makes decisions without a central nervous system (HN)
​How many mutations does the average human have, if <1 what % of people have at least 1 mutation present? (2021)​
​Human Body 2.0 Project - Idea that every part of the body should be easily replaceable in case something goes wrong.
​The Database of Useful Biological Numbers (HN)
​Photosynthesis microetched print​
​Scientists create simple synthetic cell (2021) (HN)
​Modern Statistics for Modern Biology​
​Cell Size and Scale​
​How a carnivorous mushroom poisons its prey (2021) (HN)
​There’s no such thing as a tree (phylogenetically) (2021)​
​Journey to the Microcosmos (Twitter)
​Awesome Synthetic Biology​
​Computationally Designed Organisms With Josh Bongard & Michael Levin (2021)​
​How Slime Molds Remember Where They Ate (2021)​
​Translational stem cell therapy: vascularized skin grafts in skin repair and regeneration (2021)​
​Imaging The Human Body With Muons (Reddit)
​Lab Cultures: An Interview with an Anonymous Biologist (2019)​
​Toward a More Accurate 3D Atlas of C. elegans Neurons (2021) (Tweet)
​Mike Levin on electrifying insights into how bodies form (2019) (HN)
​Platelets (Thrombocytes) | The Cell Pieces That Lack Nucleus​
​Entangled Life: How Fungi Make Our Worlds, Change Our Minds & Shape Our Futures (2020) (Summary)
​Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism (2021) (Tweet)
​Please, enough with the dead butterflies (2017) (HN)
​Alison Pollack's Marin Mushrooms Photos​
​What Slime Knows​
​Three-dimensional geometry controls division symmetry in stem cell colonies (2021) - Explore how embryonic stem cells control their size after cell division. (Tweet)
​MRC LMCB at UCL - Develops new molecular understandings of cell function. (Twitter)
​Biologists Rethink the Logic Behind Cells’ Molecular Signals (2021) (HN)
​Visually appealing biology science fiction (2021)​
​Awesome Bioreactors​
​Walking Trees, Parasitic Flowers, and Other Remarkable Plants (HN)
​Syllabus: Advanced Biological Statistics II (2018) (Code)
​Short graduate population biology course​
​Analogies between Biology and Deep Learning (2021) (Tweet)
​Conception - Turning stem cells into human eggs. (HN) (Article)
​OpenWorm - Open-source project dedicated to creating a virtual C. elegans nematode in a computer. (Code) (HN)
​The secret lives of cells – as never seen before (HN)
​How to Synbio - Resources I always recommend to new synthetic biologists.
​Poly - Go package for engineering organisms.
​Chance and Necessity: An Essay on the Natural Philosophy of Modern Biology (1972)​
​BMC Biology (Twitter)
​BMC, research in progress​

Dark matter

Viruses

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