Notes

• The body is always trying to maintain homeostasis by either allowing or removing certain particles/molecules/chemicals/compounds/..

Links

• ​The Secret Life of Plankton​

• ​What Bodies Think About: Bioelectric Computation Outside the Nervous System - NeurIPS 2018 - Incredible research. (HN)

• ​Ask HN: Can we write a programming language for biology? (2019)​

• ​Awesome Bio Datasets​

• ​Kappa - Rule-based language for modeling systems of interacting agents. While its current development is primarily motivated by molecular systems biology, its range of applications is quite broad.

• ​KaSim - Stochastic simulator for rule-based models written in Kappa. KaSa is a static analyser for Kappa models.

• ​BioJulia - Julialang community for biologists and bioinformaticians, working to create great modern software packages for computing with biological data.

• ​Rob Reid - the dark side of gene editing and synthetic biology (2019)​

• ​New universe of miniproteins is upending cell biology and genetics (2019) (HN)

• ​Biology is Eating the World: A Manifesto (2019) (HN)

• ​Ask HN: Getting started in biology with a software background (2019)​

• ​A natural biomolecule has been measured acting like a quantum wave for the first time (2019) (Paper)

• ​KEGG PATHWAY - Collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.

• ​Hand drawn chart of all the metabolic pathways in the body​

• ​2019 - The Year in Biology​

• ​Synthetic Biology One course​

• ​Accelerating Photosynthesis (HN)

• ​Algorithmic Botany (HN)

• ​The Algorithmic Beauty of Plants (1990) (PDF) (HN) (Code)

• ​the Node - Community site for and by developmental biologists.

• ​Quantum Biology - How Plants Use Quantum Mechanics (2020)​

• ​HN: If the heart is a muscle, why doesn't it ever get tired?​

• ​Zhang Lab - Studies biological diversity to discover systems and processes that may be harnessed for the improvement of human health.

• ​Entropy and life (HN)

• ​The Secret Lives of Fungi (2020) (HN)

• ​What happens in our brain when we feel an emotion (especially fear, anxiety)​

• ​Formal Systems in Biology - Collection of resources that apply formal systems to model biological processes.

• ​MBARI's Bioinspiration Lab​

• ​bioRxiv.org - Preprint server for Biology.

• ​Modeling Life - The Mathematics of Biological Systems.

• ​Why Are Plants Green? To Reduce the Noise in Photosynthesis (2020) (HN)

• ​Cell Biology by the Numbers​

• ​Haseloff Lab - Synthetic Biology for engineering plant growth.

• ​When Two Bacteria Become One (2020) (HN)

• ​Trefle Botanical API (HN) (Web)

• ​When Plants Go to War (HN)

• ​Adaptive optics/lattice light-sheet microscope (2018)​

• ​Drosophila Cell Division on Lattice Light Sheet Microscope​

• ​Mushroom spores spreading in the wind​

• ​Cell Press - Publisher of biomedical journals.

• ​Cell Signaling Technologies – Most detailed 3D model of human cells (2020) (HN)

• ​Building a chemical blueprint for human blood (2020)​

• ​I should have loved biology (HN)

• ​Biochemical Pathways - Provide an overview of the chemical reactions of cells in various species and organs.

• ​Dr. Najeeb Medical Lectures​

• ​Fungi’s Lessons for Adapting to Life on a Damaged Planet (2020)​

• ​Handbook of Biological Statistics​

• ​American Society for Microbiology​

• ​Mushrooms, Russia and History Book (1957)​

• ​A single cell slime mold makes decisions without a central nervous system (HN)

• ​How many mutations does the average human have, if <1 what % of people have at least 1 mutation present? (2021)​

• ​Human Body 2.0 Project - Idea that every part of the body should be easily replaceable in case something goes wrong.

• ​The Database of Useful Biological Numbers (HN)

• ​Photosynthesis microetched print​

• ​Scientists create simple synthetic cell (2021) (HN)

• ​Modern Statistics for Modern Biology​

• ​Cell Size and Scale​

• ​How a carnivorous mushroom poisons its prey (2021) (HN)

• ​There’s no such thing as a tree (phylogenetically) (2021)​

• ​Journey to the Microcosmos (Twitter)

• ​Awesome Synthetic Biology​

• ​Computationally Designed Organisms With Josh Bongard & Michael Levin (2021)​

• ​How Slime Molds Remember Where They Ate (2021)​

• ​Translational stem cell therapy: vascularized skin grafts in skin repair and regeneration (2021)​

• ​Imaging The Human Body With Muons (Reddit)

• ​Lab Cultures: An Interview with an Anonymous Biologist (2019)​

• ​Toward a More Accurate 3D Atlas of C. elegans Neurons (2021) (Tweet)

• ​Mike Levin on electrifying insights into how bodies form (2019) (HN)

• ​Platelets (Thrombocytes) | The Cell Pieces That Lack Nucleus​

• ​Entangled Life: How Fungi Make Our Worlds, Change Our Minds & Shape Our Futures (2020) (Summary)

• ​Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism (2021) (Tweet)

• ​Please, enough with the dead butterflies (2017) (HN)

• ​Alison Pollack's Marin Mushrooms Photos​

• ​What Slime Knows​

• ​Three-dimensional geometry controls division symmetry in stem cell colonies (2021) - Explore how embryonic stem cells control their size after cell division. (Tweet)

• ​MRC LMCB at UCL - Develops new molecular understandings of cell function. (Twitter)